Preprocessing Resources for New ENIGMA-Bipolar Disease Working Group Members
Running FreeSurfer on your structural MRI data to obtain subcortical and cortical segmentations:
- Step 1: Run FreeSurfer
- Step 2: Extract Subcortical Measures from FreeSurfer & Steps for Quality Checking of Outputs
- Step 3: Extract Cortical Measures from FreeSurfer
- Step 4: Steps for Quality Checking of Outputs The new guide includes updated quality control guidelines based on input from the ENIGMA Disease Working Groups and after quality checking thousands of subjects.
- ENIGMA Cortical QC Template
Shape Analysis:
The success of subcortical volume analysis in disease and the remarkable GWAS discoveries lends itself to a more detailed look into subcortical structures
Diffusion MRI Analysis:
Click here to view ENIGMA's DTI protocols webpage.
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